Hierarchy For All Packages

Package Hierarchies:

• datastructure,
• exceptions,
• main,
• utility

Class Hierarchy

• java.lang.Object
  • datastructure.Attributable
    • datastructure.Contig
    • datastructure.Feature
    • datastructure.Sample
    • datastructure.SequenceType
      • datastructure.Feature.Allele
      • datastructure.Feature.Proteoform
    • datastructure.VariantInformation
  • utility.CLI
  • utility.Constants
  • utility.IO
  • utility.Logging
  • main.Musial
  • main.Musial.Update
  • main.Musial.View
  • utility.OS
  • utility.SequenceOperations
  • datastructure.Storage
  • datastructure.Storage.Factory
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • exceptions.MusialException
  • utility.Validation

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • main.Musial.Task
    • utility.SequenceOperations.MarginalGaps
    • datastructure.VariantInformation.Type