Package op

Record Class VCFProcessor.UpstreamDeletion

java.lang.Object
java.lang.Record
op.VCFProcessor.UpstreamDeletion
Record Components:
contigIdentifier - The unique identifier of the contig where the deletion occurs.
start - The start position of the deletion.
end - The end position of the deletion.
isFiltered - A boolean flag indicating whether the deletion is filtered.
Enclosing class:
VCFProcessor
public static record VCFProcessor.UpstreamDeletion(String contigIdentifier, int start, int end, boolean isFiltered) extends Record
Represents an upstream deletion affecting a sample.

This record encapsulates the details of an upstream deletion, including:

  • The contig identifier where the deletion occurs.
  • The start position of the deletion.
  • The end position of the deletion.
  • A flag indicating whether the deletion is filtered.

  • Constructor Details

    • UpstreamDeletion

      public UpstreamDeletion(String contigIdentifier, int start, int end, boolean isFiltered)
      Creates an instance of a UpstreamDeletion record class.
      Parameters:
      contigIdentifier - the value for the contigIdentifier record component
      start - the value for the start record component
      end - the value for the end record component
      isFiltered - the value for the isFiltered record component

  • Method Details

    • toString

      public final String toString()
      Returns a string representation of this record class. The representation contains the name of the class, followed by the name and value of each of the record components.
      Specified by:
      toString in class Record
      Returns:
      a string representation of this object

    • hashCode

      public final int hashCode()
      Returns a hash code value for this object. The value is derived from the hash code of each of the record components.
      Specified by:
      hashCode in class Record
      Returns:
      a hash code value for this object

    • equals

      public final boolean equals(Object o)
      Indicates whether some other object is "equal to" this one. The objects are equal if the other object is of the same class and if all the record components are equal. Reference components are compared with Objects::equals(Object,Object); primitive components are compared with '=='.
      Specified by:
      equals in class Record
      Parameters:
      o - the object with which to compare
      Returns:
      true if this object is the same as the o argument; false otherwise.

    • contigIdentifier

      public String contigIdentifier()
      Returns the value of the contigIdentifier record component.
      Returns:
      the value of the contigIdentifier record component

    • start

      public int start()
      Returns the value of the start record component.
      Returns:
      the value of the start record component

    • end

      public int end()
      Returns the value of the end record component.
      Returns:
      the value of the end record component

    • isFiltered

      public boolean isFiltered()
      Returns the value of the isFiltered record component.
      Returns:
      the value of the isFiltered record component