Package op

Class StorageFactory

java.lang.Object

op.StorageFactory

public class StorageFactory
extends Object

Factory class for creating and loading Storage objects.

Method Summary

Modifier and Type	Method	Description
static Storage	fromCli(CLIBuild cli)	Constructs a Storage object from definitions in CLIBuild.
static Storage	fromPath(Path path)	Reads a Storage object from the specified file path.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

fromPath

public static Storage fromPath(Path path)
                        throws IOException

Reads a Storage object from the specified file path.

This method validates the file, determines if it is GZIP-compressed based on its extension, and reads its contents. The contents are then deserialized into a Storage object using Gson.

Parameters:

path - The Path to the file containing the serialized Storage object.

Returns:

The deserialized Storage object.

Throws:

IOException - If the file cannot be read or deserialized.

fromCli

public static Storage fromCli(CLIBuild cli)
                       throws IOException

Constructs a Storage object from definitions in CLIBuild.

This method initializes a Storage object using parameters provided via the CLIBuild instance. It sets up the storage parameters, optionally populates contigs from a reference, and loads features and sample information from the CLI parameters.

Parameters:

cli - The CLIBuild instance containing the parameters and definitions for constructing the Storage object.

Returns:

A Storage object representing the loaded data.

Throws:

IOException - If an error occurs while reading files or parsing data.