Package model

Enum Class VariantCall.Flag

java.lang.Object

java.lang.Enum<VariantCall.Flag>

model.VariantCall.Flag

All Implemented Interfaces:

Serializable, Comparable<VariantCall.Flag>, Constable

Enclosing class:

VariantCall

public static enum VariantCall.Flag
extends Enum<VariantCall.Flag>

Enumeration of flags representing the status of a variant call.

This enum defines various flags that describe the state or quality of a variant call:

• LOW_FREQUENCY - Indicates that the variant call has a frequency below the minimum threshold.
• LOW_COVERAGE - Indicates that the variant call has a coverage below the minimum threshold.
• MISSING_UPSTREAM_DELETION - Indicates that the variant call is missing due to an upstream deletion.
• REFERENCE_CALL - Indicates that the variant call corresponds to the reference allele.
• PASS - Indicates that the variant call has passed all filters.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
LOW_COVERAGE	Indicates that the variant call has a coverage below the minimum threshold.
LOW_FREQUENCY	Indicates that the variant call has a frequency below the minimum threshold.
MISSING_UPSTREAM_DELETION	Indicates that the variant call is declared missing due to an upstream deletion, but the upstream deletion is not present or was filtered.
PASS	Indicates that the variant call has passed all filters.
REFERENCE_CALL	Indicates that the variant call corresponds to the reference allele.
UPSTREAM_DELETION	Indicates that the variant call is missing due to an upstream deletion.

Method Summary

Modifier and Type	Method	Description
static VariantCall.Flag	valueOf(String name)	Returns the enum constant of this class with the specified name.
static VariantCall.Flag[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

LOW_FREQUENCY

public static final VariantCall.Flag LOW_FREQUENCY

Indicates that the variant call has a frequency below the minimum threshold.

LOW_COVERAGE

public static final VariantCall.Flag LOW_COVERAGE

Indicates that the variant call has a coverage below the minimum threshold.

MISSING_UPSTREAM_DELETION

public static final VariantCall.Flag MISSING_UPSTREAM_DELETION

Indicates that the variant call is declared missing due to an upstream deletion, but the upstream deletion is not present or was filtered.

UPSTREAM_DELETION

public static final VariantCall.Flag UPSTREAM_DELETION

Indicates that the variant call is missing due to an upstream deletion.

REFERENCE_CALL

public static final VariantCall.Flag REFERENCE_CALL

Indicates that the variant call corresponds to the reference allele.

PASS

public static final VariantCall.Flag PASS

Indicates that the variant call has passed all filters.

Method Details

values

public static VariantCall.Flag[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static VariantCall.Flag valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null