Package model

package model

Constitutes the storage model of the MUSIAL application.

Class	Description
Allele	Represents an allele, which is a specific sequence type associated with a set of samples and a proteoform.
Attributes	Base class for entities to store arbitrary attributes as Strings.
Contig	Represents a reference genomic location.
Feature	Representation of a genomic feature.
Feature.SubFeature	Represents a sub-feature of a genomic feature.
Proteoform	Represents a proteoform, which is a specific sequence type associated with a set of alleles.
Sample	Represents a single biological sample.
SequenceType	Represents a sequence type with associated variants and attributes.
Storage	Central component of the MUSIAL model, designed to manage genomic data, including contigs, features, and samples.
Storage.Parameters	The parameters used for configuring the storage of variant data.
Variant	Represents a nucleotide variant.
Variant.Stub	Represents a simplified variant stub with position and alternative allele information.
Variant.Type	Enum representing the type of variant.
VariantCall	Represents a variant call in a biological sample.
VariantCall.CallAlternative	Represents one alternative in the context of a variant call.
VariantCall.Flag	Enumeration of flags representing the status of a variant call.
VariantCall.VariantCallSerializer	Serializer for the VariantCall class.