Package utility

Enum Class SequenceOperations.MarginalGaps

java.lang.Object

java.lang.Enum<SequenceOperations.MarginalGaps>

utility.SequenceOperations.MarginalGaps

All Implemented Interfaces:

Serializable, Comparable<SequenceOperations.MarginalGaps>, Constable

Enclosing class:

SequenceOperations

public static enum SequenceOperations.MarginalGaps
extends Enum<SequenceOperations.MarginalGaps>

Enum to store different modes to handle prefix gaps for global sequence alignment.

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Enum

Enum.EnumDesc<E extends Enum<E>>

Enum Constant Summary

Enum Constants

Enum Constant	Description
FORBID	Gaps at the end of a sequence are not allowed.
FREE	Gaps at the ends of a sequence are not penalized.
PENALIZE	Gaps at the end of a sequence are penalized normally.

Method Summary

Modifier and Type	Method	Description
static SequenceOperations.MarginalGaps	valueOf(String name)	Returns the enum constant of this class with the specified name.
static SequenceOperations.MarginalGaps[]	values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, describeConstable, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Details

FREE

public static final SequenceOperations.MarginalGaps FREE

Gaps at the ends of a sequence are not penalized.

PENALIZE

public static final SequenceOperations.MarginalGaps PENALIZE

Gaps at the end of a sequence are penalized normally.

FORBID

public static final SequenceOperations.MarginalGaps FORBID

Gaps at the end of a sequence are not allowed.

Method Details

values

public static SequenceOperations.MarginalGaps[] values()

Returns an array containing the constants of this enum class, in the order they are declared.

Returns:

an array containing the constants of this enum class, in the order they are declared

valueOf

public static SequenceOperations.MarginalGaps valueOf(String name)

Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum class has no constant with the specified name

NullPointerException - if the argument is null