Package datastructure

Class Feature.Proteoform

java.lang.Object

datastructure.Attributable

datastructure.SequenceType

datastructure.Feature.Proteoform

Enclosing class:

Feature

public class Feature.Proteoform
extends SequenceType

Represents a proteoform associated with a genomic feature.

A proteoform is a specific variant of a protein sequence that is derived from the genomic feature. This class extends SequenceType and provides functionality for managing proteoforms, including their unique identifiers, variants, and attributes.

Field Summary

Fields inherited from class datastructure.SequenceType

_uid, name, occurrence, variants

Method Summary

Methods inherited from class datastructure.SequenceType

addOccurrence, computeLengthVariation, getFastaHeader, getName, getOccurrence, getVariant, getVariants, hasOccurrence, hasVariant, hasVariant, occurrenceAsString, setName, toString, variantsAsString, variantsAsString, variantsAsString

Methods inherited from class datastructure.Attributable

addAttributeIfAbsent, addAttributesIfAbsent, attributesAsString, attributesAsString, clearAttributes, extendAttribute, extendAttributes, getAttribute, getAttributeAsCollection, getAttributes, hasAttribute, hasAttributes, removeAttribute, setAttribute, setAttributes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait