Package datastructure

Class Feature.Allele

java.lang.Object

datastructure.Attributable

datastructure.SequenceType

datastructure.Feature.Allele

Enclosing class:

Feature

public class Feature.Allele
extends SequenceType

Represents an allele associated with a genomic feature.

An allele is a specific variant of a sequence type that is associated with a genomic feature. This class extends SequenceType and provides functionality for managing alleles, including their unique identifiers, variants, and attributes.

Field Summary

Fields inherited from class datastructure.SequenceType

name, occurrence, uid, variants

Fields inherited from class datastructure.Attributable

sampleOccurrence

Method Summary

Methods inherited from class datastructure.SequenceType

addOccurrence, computeLengthVariation, getCount, getFastaHeader, getName, getNameOrUid, getOccurrence, getVariant, getVariants, hasOccurrence, hasVariant, occurrenceAsString, setName, toString, variantsAsString, variantsAsString, variantsAsString

Methods inherited from class datastructure.Attributable

addAttributeIfAbsent, addAttributesIfAbsent, attributesAsString, attributesAsString, clearAttributes, extendAttribute, extendAttributes, getAttribute, getAttributeAsCollection, getAttributeOrDefault, getAttributes, hasAttribute, hasAttributes, removeAttribute, setAttribute, setAttributes

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait